OBO Foundry dashboard analysis¶

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/tmp/ipykernel_25744/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    177
unknown             2
OWL/XML Syntax      2
RDF/XML             2
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 181 137813.054645 788475.804410 0.0 1431.5 7116.0 28879.5 9928241.0
Declaration 181 27715.131148 187556.705850 0.0 427.5 1177.0 4809.5 2427686.0
SubClassOf 176 36567.005464 212917.400415 0.0 335.0 1370.0 6530.5 2427657.0
EquivalentClasses 128 2680.098361 13604.320439 0.0 0.0 25.0 214.0 126427.0
SubAnnotationPropertyOf 115 8.825137 19.210861 0.0 0.0 2.0 7.0 160.0
TransitiveObjectProperty 114 6.289617 11.161563 0.0 0.0 2.0 6.0 69.0
SubObjectPropertyOf 103 42.049180 97.368355 0.0 0.0 2.0 40.0 674.0
DisjointClasses 95 29.606557 92.691609 0.0 0.0 1.0 21.0 638.0
ObjectPropertyRange 85 14.830601 27.517602 0.0 0.0 0.0 19.0 142.0
ObjectPropertyDomain 85 15.092896 28.355613 0.0 0.0 0.0 18.5 148.0
InverseObjectProperties 81 9.409836 18.183174 0.0 0.0 0.0 12.5 113.0
SubPropertyChainOf 66 9.928962 26.500889 0.0 0.0 0.0 2.0 149.0
ClassAssertion 64 80.360656 477.529035 0.0 0.0 0.0 18.0 5528.0
FunctionalObjectProperty 49 0.836066 1.724233 0.0 0.0 0.0 1.0 9.0
SymmetricObjectProperty 48 1.650273 8.516828 0.0 0.0 0.0 1.0 81.0
DataPropertyRange 44 1.114754 3.141874 0.0 0.0 0.0 0.0 30.0
DataPropertyDomain 39 1.054645 3.156585 0.0 0.0 0.0 0.0 32.0
IrrefexiveObjectProperty 37 0.606557 2.315348 0.0 0.0 0.0 0.0 26.0
DifferentIndividuals 34 0.808743 6.012947 0.0 0.0 0.0 0.0 81.0
AnnotationPropertyRangeOf 34 1.398907 10.159140 0.0 0.0 0.0 0.0 133.0
SubDataPropertyOf 30 0.852459 3.592587 0.0 0.0 0.0 0.0 33.0
EquivalentObjectProperties 29 1.524590 5.662504 0.0 0.0 0.0 0.0 36.0
FunctionalDataProperty 25 0.491803 1.529450 0.0 0.0 0.0 0.0 11.0
AsymmetricObjectProperty 21 0.513661 2.515573 0.0 0.0 0.0 0.0 26.0
InverseFunctionalObjectProperty 21 0.169399 0.553454 0.0 0.0 0.0 0.0 4.0
Rule 20 1.699454 5.754344 0.0 0.0 0.0 0.0 29.0
DisjointObjectProperties 15 0.234973 1.145695 0.0 0.0 0.0 0.0 10.0
ObjectPropertyAssertion 14 12.524590 101.958611 0.0 0.0 0.0 0.0 1024.0
ReflexiveObjectProperty 11 0.109290 0.501723 0.0 0.0 0.0 0.0 4.0
AnnotationPropertyDomain 10 0.267760 1.620405 0.0 0.0 0.0 0.0 17.0
DisjointUnion 7 0.087432 0.557669 0.0 0.0 0.0 0.0 5.0
DataPropertyAssertion 5 0.180328 1.605364 0.0 0.0 0.0 0.0 20.0
DatatypeDefinition 2 0.109290 1.406059 0.0 0.0 0.0 0.0 19.0
SameIndividual 1 0.005464 0.073922 0.0 0.0 0.0 0.0 1.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 180 113039.355191 627909.549275 0.0 1362.5 5158.0 20027.5 7282973.0
ObjectSomeValuesFrom 162 16664.961749 87045.572662 0.0 34.0 440.0 2839.5 853209.0
ObjectIntersectionOf 123 4153.967213 20240.316138 0.0 0.0 33.0 433.5 202240.0
ObjectUnionOf 88 27.797814 89.466720 0.0 0.0 0.0 16.0 767.0
ObjectAllValuesFrom 74 29.420765 147.926374 0.0 0.0 0.0 10.5 1764.0
ObjectComplementOf 64 13.672131 84.373135 0.0 0.0 0.0 2.0 1084.0
ObjectMinCardinality 62 2.502732 8.378330 0.0 0.0 0.0 1.0 57.0
ObjectExactCardinality 48 9.699454 88.706470 0.0 0.0 0.0 1.0 1193.0
ObjectOneOf 45 5.174863 34.487169 0.0 0.0 0.0 0.0 273.0
DataMinCardinality 27 0.256831 0.699014 0.0 0.0 0.0 0.0 4.0
DataSomeValuesFrom 23 6.972678 64.454297 0.0 0.0 0.0 0.0 859.0
DataExactCardinality 23 0.551913 1.649603 0.0 0.0 0.0 0.0 7.0
ObjectHasValue 20 143.366120 1582.083114 0.0 0.0 0.0 0.0 21288.0
ObjectMaxCardinality 19 0.841530 4.746546 0.0 0.0 0.0 0.0 45.0
DataHasValue 18 120.382514 1573.499427 0.0 0.0 0.0 0.0 21288.0
ObjectHasSelf 16 0.229508 0.961800 0.0 0.0 0.0 0.0 6.0
DataAllValuesFrom 3 0.103825 1.029849 0.0 0.0 0.0 0.0 13.0
DataMaxCardinality 2 0.010929 0.104254 0.0 0.0 0.0 0.0 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
120 omo 0.959 0.956 0.962
8 bfo 0.807 0.822 0.792
150 ro 0.796 0.844 0.749
132 pato 0.716 0.956 0.475
64 go 0.706 0.904 0.508
110 obi 0.688 0.949 0.426
20 cl 0.622 0.949 0.295
102 ncbitaxon 0.605 0.822 0.388
166 uberon 0.589 0.800 0.377
144 pr 0.549 0.853 0.246
35 doid 0.540 0.949 0.131
44 envo 0.531 0.876 0.186
94 mondo 0.499 0.949 0.049
69 hp 0.499 0.867 0.131
174 wbphenotype 0.494 0.978 0.011
139 plana 0.494 0.978 0.011
173 wbls 0.494 0.978 0.011
113 ogms 0.489 0.733 0.246
40 eco 0.477 0.949 0.005
163 trans 0.474 0.920 0.027
36 dpo 0.474 0.949 0.000
128 opl 0.472 0.927 0.016
96 mp 0.469 0.889 0.049
160 symp 0.466 0.882 0.049
111 obib 0.466 0.904 0.027
63 gno 0.466 0.927 0.005
122 omrse 0.465 0.838 0.093
42 ecto 0.464 0.911 0.016
2 aism 0.460 0.904 0.016
108 oba 0.458 0.889 0.027
46 eupath 0.453 0.889 0.016
134 pco 0.451 0.793 0.109
52 fbdv 0.449 0.882 0.016
138 phipo 0.447 0.882 0.011
11 caro 0.446 0.667 0.224
80 lepao 0.445 0.889 0.000
133 pcl 0.445 0.889 0.000
180 zfa 0.442 0.867 0.016
50 fbbt 0.442 0.867 0.016
99 mro 0.441 0.882 0.000
51 fbcv 0.441 0.860 0.022
171 vto 0.441 0.882 0.000
73 iao 0.438 0.876 0.000
32 ddpheno 0.436 0.867 0.005
172 wbbt 0.435 0.860 0.011
17 chmo 0.435 0.816 0.055
125 ontoavida 0.430 0.860 0.000
37 dron 0.429 0.771 0.087
41 ecocore 0.427 0.844 0.011
182 zp 0.427 0.844 0.011
25 cob 0.422 0.822 0.022
152 rxno 0.421 0.838 0.005
95 mop 0.421 0.816 0.027
66 hancestro 0.416 0.816 0.016
58 fypo 0.413 0.822 0.005
140 planp 0.413 0.822 0.005
9 bspo 0.412 0.727 0.098
179 zeco 0.411 0.822 0.000
26 colao 0.411 0.822 0.000
59 gecko 0.410 0.816 0.005
0 ado 0.408 0.816 0.000
141 po 0.401 0.704 0.098
13 cdno 0.400 0.800 0.000
178 xpo 0.399 0.793 0.005
7 bco 0.399 0.793 0.005
75 ico 0.394 0.749 0.038
117 ohpi 0.394 0.787 0.000
38 duo 0.390 0.764 0.016
162 to 0.388 0.771 0.005
149 rbo 0.388 0.771 0.005
101 nbo 0.387 0.653 0.120
146 psdo 0.382 0.764 0.000
47 exo 0.380 0.733 0.027
56 foodon 0.373 0.660 0.087
70 hsapdv 0.369 0.711 0.027
116 ohmi 0.369 0.733 0.005
76 ido 0.368 0.616 0.120
57 fovt 0.366 0.733 0.000
145 proco 0.363 0.727 0.000
45 epio 0.363 0.727 0.000
21 clao 0.363 0.727 0.000
103 ncit 0.359 0.593 0.126
39 ecao 0.355 0.711 0.000
136 pdumdv 0.355 0.711 0.000
158 stato 0.354 0.622 0.087
127 oostt 0.354 0.698 0.011
176 xco 0.349 0.682 0.016
130 ornaseq 0.344 0.689 0.000
27 cro 0.344 0.689 0.000
92 mmusdv 0.344 0.689 0.000
118 olatdv 0.344 0.689 0.000
34 disdriv 0.344 0.689 0.000
5 apollo_sv 0.340 0.587 0.093
135 pdro 0.338 0.653 0.022
167 uo 0.338 0.511 0.164
60 genepio 0.338 0.638 0.038
168 upheno 0.336 0.638 0.033
19 cio 0.334 0.667 0.000
16 chiro 0.334 0.667 0.000
4 apo 0.334 0.667 0.000
78 kisao 0.334 0.667 0.000
68 hom 0.334 0.667 0.000
159 swo 0.333 0.660 0.005
1 agro 0.333 0.660 0.005
3 amphx 0.330 0.660 0.000
48 fao 0.330 0.644 0.016
154 scdo 0.329 0.653 0.005
161 taxrank 0.328 0.644 0.011
175 xao 0.327 0.638 0.016
79 labo 0.327 0.653 0.000
143 ppo 0.327 0.653 0.000
98 mpio 0.325 0.644 0.005
43 emapa 0.322 0.638 0.005
28 cteno 0.322 0.644 0.000
81 ma 0.322 0.644 0.000
156 so 0.321 0.467 0.175
177 xlmod 0.319 0.638 0.000
71 hso 0.319 0.638 0.000
31 ddanat 0.317 0.622 0.011
91 mmo 0.316 0.616 0.016
129 opmi 0.316 0.593 0.038
49 fbbi 0.316 0.631 0.000
30 cvdo 0.314 0.616 0.011
12 cdao 0.314 0.622 0.005
181 zfs 0.314 0.622 0.005
10 bto 0.313 0.593 0.033
109 obcs 0.310 0.593 0.027
89 miapa 0.308 0.616 0.000
55 fobi 0.308 0.616 0.000
84 mf 0.308 0.578 0.038
62 geo 0.307 0.571 0.044
82 maxo 0.307 0.593 0.022
61 geno 0.304 0.593 0.016
97 mpath 0.300 0.556 0.044
15 cheminf 0.300 0.600 0.000
107 oarcs 0.300 0.600 0.000
112 ogg 0.299 0.549 0.049
106 oae 0.298 0.504 0.093
142 poro 0.296 0.593 0.000
67 hao 0.296 0.593 0.000
148 pw 0.290 0.564 0.016
83 mco 0.289 0.578 0.000
23 clyh 0.289 0.578 0.000
54 flopo 0.288 0.571 0.005
165 txpo 0.288 0.571 0.005
29 cto 0.288 0.571 0.005
119 omit 0.285 0.542 0.027
151 rs 0.284 0.564 0.005
115 ohd 0.282 0.564 0.000
137 peco 0.280 0.527 0.033
147 pso 0.278 0.556 0.000
86 mfoem 0.277 0.549 0.005
65 gsso 0.275 0.527 0.022
24 cmo 0.272 0.489 0.055
87 mfomd 0.267 0.511 0.022
88 mi 0.267 0.511 0.022
100 ms 0.266 0.520 0.011
170 vt 0.264 0.511 0.016
126 ontoneo 0.260 0.520 0.000
104 ncro 0.258 0.504 0.011
124 ons 0.256 0.489 0.022
164 tto 0.256 0.511 0.000
53 fideo 0.256 0.511 0.000
105 nomen 0.252 0.504 0.000
6 aro 0.245 0.467 0.022
121 omp 0.245 0.467 0.022
77 ino 0.241 0.460 0.022
18 cido 0.239 0.467 0.011
169 vo 0.238 0.393 0.082
155 sepio 0.236 0.467 0.005
22 clo 0.236 0.400 0.071
85 mfmo 0.234 0.467 0.000
123 one 0.230 0.460 0.000
72 htn 0.230 0.460 0.000
74 iceo 0.230 0.460 0.000
93 mod 0.227 0.438 0.016
33 dideo 0.225 0.438 0.011
157 spd 0.219 0.438 0.000
131 ovae 0.197 0.393 0.000
114 ogsf 0.197 0.393 0.000
90 micro 0.192 0.378 0.005
153 sbo 0.000 0.000 0.000
14 chebi 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 183.0 0.367710 0.120186 0.0 0.2985 0.344 0.4325 0.959
score_dash 183.0 0.683361 0.170239 0.0 0.5710 0.667 0.8220 0.978
score_impact 183.0 0.051962 0.131451 0.0 0.0000 0.011 0.0300 0.962

OBO dependency graph